Trying to Fix my Server from Read timed out Errors that don't fully crash the server.

Now I heard a lot and I mean I a lot of people get Read timed out Errors. For my they have been something that stops players from playing the server or connecting. But plugins stay active and working just fine but of course no one can play and people who were on just dc. I heard others have these hardcore ones that hard crash the server where they can't even use the stop command but not me just these semi crash ones for many months even after I had replaced every single plugin.


Here is a list of the random Read timed out I have gotten that seam to have been with more then 1 plugin.


Please also note I am not blaming any plugins just stating what I see from the crash. The time out might be just crashing or erroring these plugins at the time but I am really trying to solve this badly.

At the time of all these crashes I was using 1060, For each plugins version please check my wiki:
http://godcraft.com/wiki/server-plugins-list/

People I'm going to mention for maybe the luck they can help me out or have ideas
@TnT
@lithium3141
@FrozenCow
@Rigby trolololo <3

Mike you are special since i don't know how to @ people with spaces so I will quote you haha.

This one I have had a few time it keeps bring up OpenWarp and then goes into Time Out.
http://pastie.org/2545148

OpenWarp Dynmap Icon lol.
http://pastie.org/2545153


OpenWarp and Dynmap? Again they might just be breaking from the crash and not the crash?
http://pastie.org/2545154



Another one with OpenWarp as the problem!
http://pastie.org/2545157

Dynmap?
http://pastie.org/2545158



This one was a nasty one. Ignore the Bad packet id that is just idiots connecting to 1.7.3 server with a 1.8 client This one has Dynmap errors not sure if it's related but near the bottom.
http://pastie.org/2545162


Another Dynmap One:
http://pastie.org/2545167


This one is a bit stranger then the others. This might have been the Nic acting up?
http://pastie.org/2545170

More Information:

Plugins List during these crashes:
http://godcraft.com/wiki/server-plugins-list/

Server Specs:
CPU: Core i7-2600 Quad Core Dedicated Server Running @ 3.4Ghz
Operating System: CentOS 5 - 64-BIT
Java: Java™ Platform, 7 Developer Preview Release
Network: 1GBPS Port
RAM/Memory: 16GB DDR3
Primary Hard Drive: Force Series™ 3 120GB SATA 3 6Gb/s Solid-State Hard Drive
Backup Hard Drive: Raid 10 Hardware Based 4 x 500GB SATA
Backup: Offsite Backup
DDOS Protection Service: - (Hardware Based): Network-Level & Server-Level

Some people said this might be useful files max info:

Code:

ulimit -Sa
core file size          (blocks, -c) 0
data seg size           (kbytes, -d) unlimited
scheduling priority             (-e) 0
file size               (blocks, -f) unlimited
pending signals                 (-i) 106480
max locked memory       (kbytes, -l) 32
max memory size         (kbytes, -m) unlimited
open files                      (-n) 1024
pipe size            (512 bytes, -p) 8
POSIX message queues     (bytes, -q) 819200
real-time priority              (-r) 0
stack size              (kbytes, -s) 10240
cpu time               (seconds, -t) unlimited
max user processes              (-u) 106480
virtual memory          (kbytes, -v) unlimited
file locks                      (-x) unlimited

EDIT by Moderator: merged posts, please use the edit button instead of double posting.

 

I have no clue. But i would love if someone had a solution.

My server will crash time to time -_-