I know plugins are supporting SQL and I had it set up with hey0 before the swap, but is instructions on how to set it up with craftbukkit? Thanks!
There is no official SQL support in CraftBukkit yet. Each plugin is different, some plugins use sqlite, some use mysql. You will need to research each one to know what to do. Some plugins may also allow you to convert from hMod, or use those DB's directly. Again, you need to research each to know for sure.
Gotcha. I know some plugins need SQL to run but I am assuming they are using their own methods instead of the myslq.properties file. Also explains the reason why searching for it, nothing had come up.