Server crash since 1.10 update

My server keeps crashing since I tried updating it to 1.10. I get the following crash report:

Code:

---- Minecraft Crash Report ----
// I feel sad now :(

Time: 6/19/16 2:58 PM
Description: Loading NBT data

java.io.EOFException: Unexpected end of ZLIB input stream
   at java.util.zip.InflaterInputStream.fill(InflaterInputStream.java:240)
   at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:158)
   at java.io.BufferedInputStream.read1(BufferedInputStream.java:284)
   at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
   at java.io.DataInputStream.readFully(DataInputStream.java:195)
   at java.io.DataInputStream.readUTF(DataInputStream.java:609)
   at java.io.DataInputStream.readUTF(DataInputStream.java:564)
   at net.minecraft.server.v1_10_R1.NBTTagCompound.b(SourceFile:407)
   at net.minecraft.server.v1_10_R1.NBTTagCompound.load(SourceFile:68)
   at net.minecraft.server.v1_10_R1.NBTTagList.load(SourceFile:66)
   at net.minecraft.server.v1_10_R1.NBTTagCompound.a(SourceFile:414)
   at net.minecraft.server.v1_10_R1.NBTTagCompound.load(SourceFile:71)
   at net.minecraft.server.v1_10_R1.NBTTagCompound.a(SourceFile:414)
   at net.minecraft.server.v1_10_R1.NBTTagCompound.load(SourceFile:71)
   at net.minecraft.server.v1_10_R1.NBTCompressedStreamTools.a(SourceFile:117)
   at net.minecraft.server.v1_10_R1.NBTCompressedStreamTools.a(SourceFile:82)
   at net.minecraft.server.v1_10_R1.NBTCompressedStreamTools.a(SourceFile:78)
   at net.minecraft.server.v1_10_R1.RegionFileCache.c(RegionFileCache.java:66)
   at net.minecraft.server.v1_10_R1.ChunkRegionLoader.loadChunk(ChunkRegionLoader.java:67)
   at org.bukkit.craftbukkit.v1_10_R1.chunkio.ChunkIOProvider.callStage1(ChunkIOProvider.java:21)
   at org.bukkit.craftbukkit.v1_10_R1.chunkio.ChunkIOProvider.callStage1(ChunkIOProvider.java:1)
   at org.bukkit.craftbukkit.v1_10_R1.util.AsynchronousExecutor.skipQueue(AsynchronousExecutor.java:336)
   at org.bukkit.craftbukkit.v1_10_R1.util.AsynchronousExecutor.getSkipQueue(AsynchronousExecutor.java:295)
   at org.bukkit.craftbukkit.v1_10_R1.chunkio.ChunkIOExecutor.syncChunkLoad(ChunkIOExecutor.java:16)
   at net.minecraft.server.v1_10_R1.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:137)
   at net.minecraft.server.v1_10_R1.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:120)
   at net.minecraft.server.v1_10_R1.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:116)
   at net.minecraft.server.v1_10_R1.MinecraftServer.l(MinecraftServer.java:363)
   at net.minecraft.server.v1_10_R1.MinecraftServer.a(MinecraftServer.java:327)
   at net.minecraft.server.v1_10_R1.DedicatedServer.init(DedicatedServer.java:242)
   at net.minecraft.server.v1_10_R1.MinecraftServer.run(MinecraftServer.java:517)
   at java.lang.Thread.run(Thread.java:745)


A detailed walkthrough of the error, its code path and all known details is as follows:
---------------------------------------------------------------------------------------

-- Head --
Thread: Server thread
Stacktrace:
   at java.util.zip.InflaterInputStream.fill(InflaterInputStream.java:240)
   at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:158)
   at java.io.BufferedInputStream.read1(BufferedInputStream.java:284)
   at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
   at java.io.DataInputStream.readFully(DataInputStream.java:195)
   at java.io.DataInputStream.readUTF(DataInputStream.java:609)
   at java.io.DataInputStream.readUTF(DataInputStream.java:564)
   at net.minecraft.server.v1_10_R1.NBTTagCompound.b(SourceFile:407)
   at net.minecraft.server.v1_10_R1.NBTTagCompound.load(SourceFile:68)
   at net.minecraft.server.v1_10_R1.NBTTagList.load(SourceFile:66)

-- NBT Tag --
Details:
   Tag name: Entities
   Tag type: 9
Stacktrace:
   at net.minecraft.server.v1_10_R1.NBTTagCompound.a(SourceFile:414)
   at net.minecraft.server.v1_10_R1.NBTTagCompound.load(SourceFile:71)
   at net.minecraft.server.v1_10_R1.NBTTagCompound.a(SourceFile:414)
   at net.minecraft.server.v1_10_R1.NBTTagCompound.load(SourceFile:71)
   at net.minecraft.server.v1_10_R1.NBTCompressedStreamTools.a(SourceFile:117)
   at net.minecraft.server.v1_10_R1.NBTCompressedStreamTools.a(SourceFile:82)
   at net.minecraft.server.v1_10_R1.NBTCompressedStreamTools.a(SourceFile:78)
   at net.minecraft.server.v1_10_R1.RegionFileCache.c(RegionFileCache.java:66)
   at net.minecraft.server.v1_10_R1.ChunkRegionLoader.loadChunk(ChunkRegionLoader.java:67)
   at org.bukkit.craftbukkit.v1_10_R1.chunkio.ChunkIOProvider.callStage1(ChunkIOProvider.java:21)
   at org.bukkit.craftbukkit.v1_10_R1.chunkio.ChunkIOProvider.callStage1(ChunkIOProvider.java:1)
   at org.bukkit.craftbukkit.v1_10_R1.util.AsynchronousExecutor.skipQueue(AsynchronousExecutor.java:336)
   at org.bukkit.craftbukkit.v1_10_R1.util.AsynchronousExecutor.getSkipQueue(AsynchronousExecutor.java:295)
   at org.bukkit.craftbukkit.v1_10_R1.chunkio.ChunkIOExecutor.syncChunkLoad(ChunkIOExecutor.java:16)
   at net.minecraft.server.v1_10_R1.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:137)
   at net.minecraft.server.v1_10_R1.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:120)
   at net.minecraft.server.v1_10_R1.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:116)
   at net.minecraft.server.v1_10_R1.MinecraftServer.l(MinecraftServer.java:363)
   at net.minecraft.server.v1_10_R1.MinecraftServer.a(MinecraftServer.java:327)
   at net.minecraft.server.v1_10_R1.DedicatedServer.init(DedicatedServer.java:242)
   at net.minecraft.server.v1_10_R1.MinecraftServer.run(MinecraftServer.java:517)
   at java.lang.Thread.run(Thread.java:745)

-- System Details --
Details:
   Minecraft Version: 1.10
   Operating System: Linux (amd64) version 3.10.23-xxxx-std-ipv6-64
   Java Version: 1.8.0_92, Oracle Corporation
   Java VM Version: Java HotSpot(TM) 64-Bit Server VM (mixed mode), Oracle Corporation
   Memory: 1795162112 bytes (1712 MB) / 2147483648 bytes (2048 MB) up to 2147483648 bytes (2048 MB)
   JVM Flags: 5 total; -Xmx2048M -Xms2048M -Xss2M -XX:+UseG1GC -XX:MaxGCPauseMillis=50
   IntCache: cache: 0, tcache: 0, allocated: 12, tallocated: 94
   CraftBukkit Information:
  Running: CraftBukkit version git-Bukkit-9856d8a (MC: 1.10) (Implementing API version 1.10-R0.1-SNAPSHOT) true
  Plugins: { dynmap v2.3-SNAPSHOT-1132 org.dynmap.bukkit.DynmapPlugin [mikeprimm], WorldBorder v1.8.5 com.wimbli.WorldBorder.WorldBorder [Brettflan], OpenInv v2.3.6 com.lishid.openinv.OpenInv [lishid], Vault v1.5.6-b49 net.milkbowl.vault.Vault [cereal, Sleaker, mung3r], LogBlock v1.94 de.diddiz.LogBlock.LogBlock [DiddiZ, md_5, ammar2, frymaster], EnjinMinecraftPlugin v2.7.8-bukkit com.enjin.officialplugin.EnjinMinecraftPlugin [[URL="http://www.Enjin.com],}"]www.Enjin.com],}[/URL]
  Warnings: DEFAULT
  Reload Count: 0
  Threads: { RUNNABLE Signal Dispatcher: [], WAITING Java2D Disposer: [java.lang.Object.wait(Native Method), java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:143), java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:164), sun.java2d.Disposer.run(Disposer.java:148), java.lang.Thread.run(Thread.java:745)], WAITING Reference Handler: [java.lang.Object.wait(Native Method), java.lang.Object.wait(Object.java:502), java.lang.ref.Reference.tryHandlePending(Reference.java:191), java.lang.ref.Reference$ReferenceHandler.run(Reference.java:153)], TIMED_WAITING Abandoned connection cleanup thread: [java.lang.Object.wait(Native Method), java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:143), com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:43)], TIMED_WAITING process reaper: [sun.misc.Unsafe.park(Native Method), java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:215), java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460), java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:362), java.util.concurrent.SynchronousQueue.poll(SynchronousQueue.java:941), java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1066), java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1127), java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617), java.lang.Thread.run(Thread.java:745)], RUNNABLE Server thread: [java.lang.Thread.dumpThreads(Native Method), java.lang.Thread.getAllStackTraces(Thread.java:1603), org.bukkit.craftbukkit.v1_10_R1.CraftCrashReport.call(CraftCrashReport.java:30), net.minecraft.server.v1_10_R1.CrashReportSystemDetails.a(SourceFile:78), net.minecraft.server.v1_10_R1.CrashReport.h(CrashReport.java:126), net.minecraft.server.v1_10_R1.CrashReport.<init>(CrashReport.java:33), net.minecraft.server.v1_10_R1.CrashReport.a(CrashReport.java:320), net.minecraft.server.v1_10_R1.NBTTagCompound.a(SourceFile:416), net.minecraft.server.v1_10_R1.NBTTagCompound.load(SourceFile:71), net.minecraft.server.v1_10_R1.NBTTagCompound.a(SourceFile:414), net.minecraft.server.v1_10_R1.NBTTagCompound.load(SourceFile:71), net.minecraft.server.v1_10_R1.NBTCompressedStreamTools.a(SourceFile:117), net.minecraft.server.v1_10_R1.NBTCompressedStreamTools.a(SourceFile:82), net.minecraft.server.v1_10_R1.NBTCompressedStreamTools.a(SourceFile:78), net.minecraft.server.v1_10_R1.RegionFileCache.c(RegionFileCache.java:66), net.minecraft.server.v1_10_R1.ChunkRegionLoader.loadChunk(ChunkRegionLoader.java:67), org.bukkit.craftbukkit.v1_10_R1.chunkio.ChunkIOProvider.callStage1(ChunkIOProvider.java:21), org.bukkit.craftbukkit.v1_10_R1.chunkio.ChunkIOProvider.callStage1(ChunkIOProvider.java:1), org.bukkit.craftbukkit.v1_10_R1.util.AsynchronousExecutor.skipQueue(AsynchronousExecutor.java:336), org.bukkit.craftbukkit.v1_10_R1.util.AsynchronousExecutor.getSkipQueue(AsynchronousExecutor.java:295), org.bukkit.craftbukkit.v1_10_R1.chunkio.ChunkIOExecutor.syncChunkLoad(ChunkIOExecutor.java:16), net.minecraft.server.v1_10_R1.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:137), net.minecraft.server.v1_10_R1.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:120), net.minecraft.server.v1_10_R1.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:116), net.minecraft.server.v1_10_R1.MinecraftServer.l(MinecraftServer.java:363), net.minecraft.server.v1_10_R1.MinecraftServer.a(MinecraftServer.java:327), net.minecraft.server.v1_10_R1.DedicatedServer.init(DedicatedServer.java:242), net.minecraft.server.v1_10_R1.MinecraftServer.run(MinecraftServer.java:517), java.lang.Thread.run(Thread.java:745)], WAITING Finalizer: [java.lang.Object.wait(Native Method), java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:143), java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:164), java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:209)], WAITING Thread-4: [sun.misc.Unsafe.park(Native Method), java.util.concurrent.locks.LockSupport.park(LockSupport.java:175), java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2039), java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:442), com.mojang.util.QueueLogAppender.getNextLogEvent(QueueLogAppender.java:77), org.bukkit.craftbukkit.v1_10_R1.util.TerminalConsoleWriterThread.run(TerminalConsoleWriterThread.java:27), java.lang.Thread.run(Thread.java:745)], RUNNABLE Netty Epoll Server IO #0: [io.netty.channel.epoll.Native.epollWait(Native Method), io.netty.channel.epoll.EpollEventLoop.epollWait(EpollEventLoop.java:194), io.netty.channel.epoll.EpollEventLoop.run(EpollEventLoop.java:219), io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:116), java.lang.Thread.run(Thread.java:745)], RUNNABLE DestroyJavaVM: [], TIMED_WAITING Server Infinisleeper: [java.lang.Thread.sleep(Native Method), net.minecraft.server.v1_10_R1.DedicatedServer$1.run(DedicatedServer.java:57)], RUNNABLE Server console handler: [java.io.FileInputStream.readBytes(Native Method), java.io.FileInputStream.read(FileInputStream.java:255), java.io.BufferedInputStream.fill(BufferedInputStream.java:246), java.io.BufferedInputStream.read(BufferedInputStream.java:265), org.bukkit.craftbukkit.libs.jline.internal.NonBlockingInputStream.read(NonBlockingInputStream.java:248), org.bukkit.craftbukkit.libs.jline.internal.InputStreamReader.read(InputStreamReader.java:261), org.bukkit.craftbukkit.libs.jline.internal.InputStreamReader.read(InputStreamReader.java:198), org.bukkit.craftbukkit.libs.jline.console.ConsoleReader.readCharacter(ConsoleReader.java:2145), org.bukkit.craftbukkit.libs.jline.console.ConsoleReader.readLineSimple(ConsoleReader.java:3183), org.bukkit.craftbukkit.libs.jline.console.ConsoleReader.readLine(ConsoleReader.java:2333), org.bukkit.craftbukkit.libs.jline.console.ConsoleReader.readLine(ConsoleReader.java:2269), org.bukkit.craftbukkit.libs.jline.console.ConsoleReader.readLine(ConsoleReader.java:2257), net.minecraft.server.v1_10_R1.DedicatedServer$2.run(DedicatedServer.java:84)], TIMED_WAITING Hikari Housekeeping Timer (pool LogBlock-Connection-Pool): [sun.misc.Unsafe.park(Native Method), java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:215), java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:2078), java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:1093), java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:809), java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1067), java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1127), java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617), java.lang.Thread.run(Thread.java:745)], WAITING Snooper Timer: [java.lang.Object.wait(Native Method), java.lang.Object.wait(Object.java:502), java.util.TimerThread.mainLoop(Timer.java:526), java.util.TimerThread.run(Timer.java:505)], TIMED_WAITING HikariCP connection filler (pool LogBlock-Connection-Pool): [sun.misc.Unsafe.park(Native Method), java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:215), java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:2078), java.util.concurrent.LinkedBlockingQueue.poll(LinkedBlockingQueue.java:467), java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1066), java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1127), java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617), java.lang.Thread.run(Thread.java:745)],}
  Recent tasks from -31--1{}
   Profiler Position: N/A (disabled)
   Player Count: 0 / 24; []
   Is Modded: Definitely; Server brand changed to 'CraftBukkit'
   Type: Dedicated Server (map_server.txt)

Does anyone know what to do?

 

Hmmmm it seems like it cannot read an NBT Tag.
Try the following:
1. Stop the server and move the world, world nether and world end folders away from your server folder MAKING SURE THEY WONT BE LOST.
2. start the server.
3. it automatically creates these folders back, check if the server starts normally and if it does that means it is your world that causes the problem. Otherwise it means it is a plugin or other factor.

WARNING: make sure you wont loose your world folders!

 

Yeah, you're right, @mine-care , when removing the world folders, the server works again. Any suggestions on the next steps?