Ok, so I start up the server, and I can connect and everything. But the problem is that a console window (or anything), and I'm pretty sure there is a window that opens up (haven't used Bukkit in a while). Any help is appreciated.
If I start my server by double clicking on the jar, as I used to, nothing appears and I have to stop it ingame. Now, I use java -jar craftbukkit-0.0.1-SNAPSHOT.jar in Ubuntu terminal and it runs in that.